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Stanford Ocean Publications

Researchers, staff, and students from across Stanford University and its partners publish groundbreaking ocean research every month. Below, find the latest ocean publications from the Stanford community.

 

Summer (March - August) 2020 Ocean Publications

  • Andrzejaczek, S., Chapple, T., Curnick, D., Carlisle, A., Castleton, M., Jacoby, D., Peel, L., Schallert, R., Tickler, D., & Block, B. (2020). Individual variation in residency and regional movements of reef manta rays Mobula alfredi in a large marine protected area. Marine Ecology Progress Series, 639, 137–153. https://doi.org/10.3354/meps13270
  • Ardyna, M., Mundy, C. J., Mills, M. M., Oziel, L., Grondin, P.-L., Lacour, L., Verin, G., Van Dijken, G., Ras, J., Alou-Font, E., Babin, M., Gosselin, M., Tremblay, J.-éric, Raimbault, P., Assmy, P., Nicolaus, M., Claustre, H., & Arrigo, K. R. (2020). Environmental drivers of under-ice phytoplankton bloom dynamics in the Arctic Ocean. Elem Sci Anth, 8(1), 30. https://doi.org/10.1525/elementa.430
  • Ashley, K., Bendle, J., McKay, R., Etourneau, J., Jimenez-Espejo, F., Condron, A., Albot, A., Crosta, X., Riesselman, C., Seki, O., Massé, G., Golledge, N., Gasson, E., Lowry, D., Barrand, N., Johnson, K., Bertler, N., Escutia, C., & Dunbar, R. (2020). Mid-Holocene Antarctic sea-ice increase driven by marine ice sheet retreat. Climate of The Past Discussions, 1–36. https://doi.org/10.5194/cp-2020-3
  • Ben-Horin, T., Bidegain, G., De Leo, G., Groner, M., Hoffman, E., & Powell, E. (2020, March 6). Modelling Marine Diseases. In: Marine Disease Ecology. Oxford University Press | Request PDF. https://global.oup.com/academic/product/marine-disease-ecology-9780198821649?cc=us&lang=en&#
  • Berkowitz, H., Crowder, L. B., & Brooks, C. M. (2020). Organizational perspectives on sustainable ocean governance: A multi-stakeholder, meta-organization model of collective action. Marine Policy, 118, 104026. https://doi.org/10.1016/j.marpol.2020.104026
  • Bevilacqua, S., Katsanevakis, S., Micheli, F., Sala, E., Rilov, G., Sarà, G., ... & Mazaris, A. D. (2020). The Status of Coastal Benthic Ecosystems in the Mediterranean Sea: Evidence From Ecological Indicators. Frontiers in Marine Science, 7, 475. https://doi.org/10.3389/fmars.2020.00475
  • Cromie Lear, M. J., Millard, M., Gleiss, A. C., Dale, J., Dimitrov, M., Peiros, E., & Block, B. (2020). Biomechanical Analysis of the Slow-Twitch (Red) Muscle Force Transmission Pathways in Tunas. Physiological and Biochemical Zoology : PBZ, 93(3), 185–198. https://doi.org/10.1086/708247
  • Dalpadado, P., Arrigo, K. R., van Dijken, G. L., Skjoldal, H. R., Bagøien, E., Dolgov, A. V., Prokopchuk, I. P., & Sperfeld, E. (2020). Climate effects on temporal and spatial dynamics of phytoplankton and zooplankton in the Barents Sea. Progress in Oceanography, 185, 102320. https://doi.org/10.1016/j.pocean.2020.102320
  • Damgaard, L. R., Kelly, C., Casciotti, K., Ward, B. B., & Revsbech, N. P. (2020). Amperometric sensor for nanomolar nitrous oxide analysis. Analytica Chimica Acta, 1101, 135–140. https://doi.org/10.1016/j.aca.2019.12.019
  • Davis, K. A., Arthur, R. S., Reid, E. C., Rogers, J. S., Fringer, O. B., DeCarlo, T. M., & Cohen, A. L. (2020). Fate of Internal Waves on a Shallow Shelf. Journal of Geophysical Research: Oceans, 125(5). https://doi.org/10.1029/2019JC015377
  • Di Franco, E., Pierson, P., Di Iorio, L., Calò, A., Cottalorda, J. M., Derijard, B., ... & Micheli, F. (2020). Effects of marine noise pollution on Mediterranean fishes and invertebrates: A review. Marine Pollution Bulletin, 159, 111450. https://doi-org.stanford.idm.oclc.org/10.1016/j.marpolbul.2020.111450
  • Dinniman, M. S., St-Laurent, P., Arrigo, K. R., Hofmann, E. E., & van Dijken, G. L. (2020). Analysis of Iron Sources in Antarctic Continental Shelf Waters. Journal of Geophysical Research: Oceans, 125(5). https://doi.org/10.1029/2019JC015736
  • Dove, I. A., Leventer, A., Metcalf, M. J., Brachfeld, S. A., Dunbar, R. B., Manley, P., Shevenell, A. E., Murray, R. W., Hommeyer, M., Kryc, K. A., McLenaghan, N., Taylor, F., & Huber, B. A. (2020). Marine geological investigation of Edward VIII Gulf, Kemp Coast, East Antarctica. Antarctic Science, 32(3), 210–222. https://doi.org/10.1017/S0954102020000097
  • Dunn, N., Johri, S., Curnick, D., Carbone, C., Dinsdale, E. A., Chapple, T. K., Block, B. A., & Savolainen, V. (2020). Complete mitochondrial genome of the gray reef shark, Carcharhinus amblyrhynchos (Carcharhiniformes: Carcharhinidae). Mitochondrial DNA Part B, 5(3), 2080–2082. https://doi.org/10.1080/23802359.2020.1765208
  • Egan, G., Chang, G., Revelas, G., Monismith, S., & Fringer, O. (2020). Bottom Drag Varies Seasonally With Biological Roughness. Geophysical Research Letters, 47(15). https://doi.org/10.1029/2020GL088425
  • Franke, A., Blenckner, T., Duarte, C. M., Ott, K., Fleming, L. E., Antia, A., Reusch, T. B. H., Bertram, C., Hein, J., Kronfeld-Goharani, U., Dierking, J., Kuhn, A., Sato, C., van Doorn, E., Wall, M., Schartau, M., Karez, R., Crowder, L., Keller, D., … Prigge, E. (2020). Operationalizing Ocean Health: Toward Integrated Research on Ocean Health and Recovery to Achieve Ocean Sustainability. One Earth, 2(6), 557–565. https://doi.org/10.1016/j.oneear.2020.05.013
  • Frazão Santos, C., Agardy, T., Andrade, F., Calado, H., Crowder, L. B., Ehler, C. N., García-Morales, S., Gissi, E., Halpern, B. S., Orbach, M. K., Pörtner, H. O., & Rosa, R. (2020). Integrating climate change in ocean planning. In Nature Sustainability (Vol. 3, Issue 7, pp. 505–516). Nature Research. https://doi.org/10.1038/s41893-020-0513-x
  • Gap analysis of acoustic tracking data reveals spatial and temporal segregation of sympatric reef sharks | Scinapse. (n.d.). Retrieved July 30, 2020, from https://scinapse.io/papers/3009640707
  • Heim, N. A., Bakshi, S. H., Buu, L., Chen, S., Heh, S., Jain, A., Noll, C., Patkar, A., Rizk, N., Sundararajan, S., Villante, I., Knope, M. L., & Payne, J. L. (2020). Respiratory medium and circulatory anatomy constrain size evolution in marine macrofauna. Paleobiology, 1–16. https://doi.org/10.1017/pab.2020.16
  • Jacoby, D. M. P., Ferretti, F., Freeman, R., Carlisle, A. B., Chapple, T. K., Curnick, D. J., Dale, J. J., Schallert, R. J., Tickler, D., & Block, B. A. (2020). Shark movement strategies influence poaching risk and can guide enforcement decisions in a large, remote marine protected area. Journal of Applied Ecology, 1365-2664.13654. https://doi.org/10.1111/1365-2664.13654
  • Johri, S., Chapple, T. K., Dinsdale, E. A., Schallert, R., & Block, B. A. (2020). Mitochondrial genome of the silky shark Carcharhinus falciformis from the British Indian Ocean Territory Marine Protected Area. Mitochondrial DNA Part B, 5(3), 2416–2417. https://doi.org/10.1080/23802359.2020.1775147
  • Johri, S., Chapple, T. K., Schallert, R., Dinsdale, E. A., & Block, B. A. (2020). Complete mitochondrial genome of the whitetip reef shark Triaenodon obesus from the British Indian Ocean Territory Marine Protected Area. Mitochondrial DNA Part B, 5(3), 2347–2349. https://doi.org/10.1080/23802359.2020.1775148
  • Johri, S., Dunn, N., Chapple, T. K., Curnick, D., Savolainen, V., Dinsdale, E. A., & Block, B. A. (2020). Mitochondrial genome of the Silvertip shark, Carcharhinus albimarginatus, from the British Indian Ocean Territory. Mitochondrial DNA Part B, 5(3), 2085–2086. https://doi.org/10.1080/23802359.2020.1765210
  • Kelley, B. M., Lehrmann, D. J., Yu, M., Jost, A. B., Meyer, K. M., Lau, K. V., Altiner, D., Li, X., Minzoni, M., Schaal, E. K., & Payne, J. L. (2020). Controls on carbonate platform architecture and reef recovery across the Palaeozoic to Mesozoic transition: A high‐resolution analysis of the Great Bank of Guizhou. Sedimentology, sed.12741. https://doi.org/10.1111/sed.12741
  • Laakso, T. A., Sperling, E. A., Johnston, D. T., & Knoll, A. H. (2020). Ediacaran reorganization of the marine phosphorus cycle. Proceedings of the National Academy of Sciences of the United States of America, 117(22), 11961–11967. https://doi.org/10.1073/pnas.1916738117
  • Lambin, E. F., Kim, H., Leape, J., & Lee, K. (2020). Scaling up Solutions for a Sustainability Transition. One Earth, 3(1), 89–96. https://doi.org/10.1016/j.oneear.2020.06.010
  • LaScala‐Gruenewald, D. E., & Denny, M. W. (2020). Long‐term mechanistic hindcasts predict the structure of experimentally‐warmed intertidal communities. Oikos, oik.07468. https://doi.org/10.1111/oik.07468
  • Li, J., Pickart, R. S., Lin, P., Bahr, F., Arrigo, K. R., Juranek, L., & Yang, X. (2020). The Atlantic Water Boundary Current in the Chukchi Borderland and southern Canada Basin. Journal of Geophysical Research: Oceans. https://doi.org/10.1029/2020JC016197
  • Lopez, E., & Palumbi, S. (2020). Somatic Mutations and Genome Stability Maintenance in Clonal Coral Colonies | Molecular Biology and Evolution | Oxford Academic. Molecular Biology and Evolution, 37(3), 828–838. https://academic.oup.com/mbe/article/37/3/828/5625159
  • Lunghino, B., Santiago Tate, A. F., Mazereeuw, M., Muhari, A., Giraldo, F. X., Marras, S., & Suckale, J. (2020). The protective benefits of tsunami mitigation parks and ramifications for their strategic design. Proceedings of the National Academy of Sciences of the United States of America, 117(20), 10740–10745. https://doi.org/10.1073/pnas.1911857117
  • Mason, J. G., Alfaro-Shigueto, J., Mangel, J. C., Crowder, L. B., & Ardoin, N. M. (2020). Fishers’ solutions for hammerhead shark conservation in Peru. Biological Conservation, 243, 108460. https://doi.org/10.1016/j.biocon.2020.108460
  • Mills, M. M., Turk-Kubo, K. A., van Dijken, G. L., Henke, B. A., Harding, K., Wilson, S. T., Arrigo, K. R., & Zehr, J. P. (2020). Unusual marine cyanobacteria/haptophyte symbiosis relies on N2 fixation even in N-rich environments. ISME Journal, 1–12. https://doi.org/10.1038/s41396-020-0691-6
  • Moleón, M., Sánchez-Zapata, J. A., Donázar, J. A., Revilla, E., Martín-López, B., Gutiérrez-Cánovas, C., Getz, W. M., Morales-Reyes, Z., Campos-Arceiz, A., Crowder, L. B., Galetti, M., González-Suárez, M., He, F., Jordano, P., Lewison, R., Naidoo, R., Owen-Smith, N., Selva, N., Svenning, J.-C., … Tockner, K. (2020). Rethinking megafauna. Proceedings of the Royal Society B: Biological Sciences, 287(1922), 20192643. https://doi.org/10.1098/rspb.2019.2643
  • Moyen, N. E., Bump, P. A., Somero, G. N., & Denny, M. W. (2020). Establishing typical values for hemocyte mortality in individual mussels ( Mytilus californianus ) using fluorescence‐activated cell sorting. The FASEB Journal, 34(S1), 1–1. https://doi.org/10.1096/fasebj.2020.34.s1.01786
  • Moyen, N. E., Bump, P. A., Somero, G. N., & Denny, M. W. (2020). Establishing typical values for hemocyte mortality in individual California mussels, Mytilus californianus. Fish and Shellfish Immunology, 100, 70–79. https://doi.org/10.1016/j.fsi.2020.02.069
  • Moyen, N. E., Somero, G. N., & Denny, M. W. (2020). Mussel acclimatization to high, variable temperatures is lost slowly upon transfer to benign conditions. The Journal of Experimental Biology, 223(13). https://doi.org/10.1242/jeb.222893
  • Ng, C. A., & Micheli, F. (2020). Size-dependent vulnerability to herbivory in a coastal foundation species. Oecologia, 1-11. https://doi.org/10.1007/s00442-020-04655-3
  • Oestreich, W. K., Chapman, M. S., & Crowder, L. B. (2020). A comparative analysis of dynamic management in marine and terrestrial systems. Frontiers in Ecology and the Environment, fee.2243. https://doi.org/10.1002/fee.2243
  • Reji, L., & Francis, C. A. (2020). Metagenome-assembled genomes reveal unique metabolic adaptations of a basal marine Thaumarchaeota lineage. ISME Journal, 14(8), 2105–2115. https://doi.org/10.1038/s41396-020-0675-6
  • Reji, L., Tolar, B. B., Chavez, F. P., & Francis, C. A. (2020). Depth-Differentiation and Seasonality of Planktonic Microbial Assemblages in the Monterey Bay Upwelling System. Frontiers in Microbiology, 11. https://doi.org/10.3389/fmicb.2020.01075
  • Rudolph, T. B., Ruckelshaus, M., Swilling, M., Allison, E. H., Österblom, H., Gelcich, S., & Mbatha, P. (2020). A transition to sustainable ocean governance. Nature Communications, 11(1), 1–14. https://doi.org/10.1038/s41467-020-17410-2
  • Santoro, A. E., Buchwald, C., Knapp, A. N., Berelson, W. M., Capone, G., & Casciotti, K. L. (2020). Nitrification and nitrous oxide production in the offshore waters of the Eastern Tropical South Pacific. ESSOAr, 1–35. https://doi.org/10.1002/essoar.10503499.1
  • Segre, P. S., Potvin, J., Cade, D. E., Calambokidis, J., Di Clemente, J., Fish, F. E., Friedlaender, A. S., Gough, W. T., Kahane-Rapport, S. R., Oliveira, C., Parks, S. E., Penry, G. S., Simon, M., Stimpert, A. K., Wiley, D. N., Bierlich, K. C., Madsen, P. T., & Goldbogen, J. A. (2020). Energetic and physical limitations on the breaching performance of large whales. ELife, 9. https://doi.org/10.7554/eLife.51760
  • Stockey, R. G., Cole, D. B., Planavsky, N. J., Loydell, D. K., Frýda, J., & Sperling, E. A. (2020). Persistent global marine euxinia in the early Silurian. Nature Communications, 11(1), 1–10. https://doi.org/10.1038/s41467-020-15400-y
  • Tackaberry, J. E., Cade, D. E., Goldbogen, J. A., Wiley, D. N., Friedlaender, A. S., & Stimpert, A. K. (2020). From a calf’s perspective: Humpback whale nursing behavior on two US feeding grounds. PeerJ, 2020(3), e8538. https://doi.org/10.7717/peerj.8538
  • Tanimoto, Y., Ouellette, N. T., & Koseff, J. R. (2020). Interaction between an inclined gravity current and a pycnocline in a two-layer stratification. Journal of Fluid Mechanics, 887. https://doi.org/10.1017/jfm.2020.9
  • Tolar, B. B., Reji, L., Smith, J. M., Blum, M., Pennington, J. T., Chavez, F. P., & Francis, C. A. (2020). Time series assessment of Thaumarchaeota ecotypes in Monterey Bay reveals the importance of water column position in predicting distribution–environment relationships. Limnology and Oceanography, lno.11436. https://doi.org/10.1002/lno.11436